Publications

Marble Surface
Submitted manuscripts
 
Regulation of loop extrusion on the interphase genome

Hyogyung Shin, Yoori Kim*

 
CTCF and R-loops are boundaries of cohesin-mediated DNA looping

Hongshan Zhang, Zhubing Shi, Yoori Kim, Hongtao Yu, Xiao-chen Bai, Ilya J. Finkelstein

 
Shaping the 3D genome by the ATPase machine cohesin

Yoori Kim, Hongtao Yu 

Experimental & Molecular Medicine, December 2, 2020

[Link] [PDF]

 
Epigenetic cell fate in Candida albicans is controlled by transcription factor condensates acting at super-enhancer-like elements

Corey Frazer, Mae I Staples, Yoori Kim, Matthew Hirakawa, Maureen A Dowell, Nicole V Johnson, Aaron D Hernday, Veronica H Ryan, Nicolas L Fawzi, Ilya J Finkelstein, Richard J Bennett 

Nature Microbiology, 5(11), 1374-1389, November 1, 2020

[Link] [PDF]

 
Human cohesin compacts DNA by loop extrusion

Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J. Finkelstein, Hongtao Yu 

Science, 366(6471), 1345-1349, December 13, 2019

[Link] [PDF]

 
Intrinsically disordered regions regulate both catalytic and non-catalytic activities of the MutLα mismatch repair complex

Yoori Kim, Christopher M. Furman, Carol M. Manhart, Eric Alani, and Ilya J. Finkelstein 

Nucleic Acids Research, 47(4), 1823-1835, February 28, 2019

[Link] [PDF]

 

Assembly and translocation of a CRISPR-Cas primed acquisition complex

Kaylee E. Dillard, Maxwell W. Brown, Yibei Xiao, Adam Dolan, Erik Hernandez, Samuel Dahlhauser, Yoori Kim, Logan R. Myler, Eric Anslyn, Ailong Ke, and Ilya J. Finkelstein

Cell, 175(4), 934-946, November 1, 2018

[Link] [PDF]

 
 
Efficient modification of λ-DNA substrates for single-molecule studies

Yoori Kim, Armando de la Torre, Andrew Leal, Ilya Finkelstein 

Scientific Reports, 7(1), 2071, December 1, 2017

[Link] [PDF]

 
 
Single-molecule imaging reveals how Mre11-Rad50-Nbs1 initiates DNA break repair

Logan Myler, Ignacio Gallardo, Michael M. Soniat, Rajashree Deshpande, Xenia Gonzalez, Yoori Kim, Tanya Paull, Ilya Finkelstein 

Molecular Cell, 67(5), 891-898, September 7, 2017

[Link] [PDF]

 
 
Next-Generation DNA Curtains for Single-Molecule Studies of Homologous Recombination

Michael Soniat, Logan Myler, Jeffrey Schaub, Yoori Kim, Ignacio Gallardo, Ilya Finkelstein

Methods in Enzymology, 592, 259-281, 2017

[Link] [PDF]

 
 
Dynamic DNA binding licenses a repair factor to bypass roadblocks in search of DNA lesions

Maxwell Brown, Yoori Kim, Gregory Williams, John Huck, Jennifer Surtees, Ilya Finkelstein 

Nature Communications, 7:10607, February 3, 2016

[Link] [PDF]

 
The Production of High Purity Phycocyanin by Spirulina platensis Using Light-Emitting Diodes Based Two-Stage Cultivation

Sang-Hyo Lee, Ju Eun Lee, Yoori Kim, Seung-Yop Lee

Applied Biochemistry and Biotechnology, 178(2), 382–395, January 1, 2016

[Link] [PDF]

 
 
Neutravidin Coated Surfaces for Single DNA Molecule Analysis

Yoori Kim, Kyubong Jo, 

Chemical Communications, 47(22), 6248-6250, June 14, 2011

[Link] [PDF]

 
 
Nanochannel Confinement: DNA Stretch Approaching Full Contour Length

Yoori Kim, Kiseok Kim, Kristy L. Kounovsky, Rakwoo Chang, Gun Young Jung, Juan J. de Pablo, Kyubong Jo, David C. Schwartz, 

Lab on a Chip, 11(10), 1721-1729, May 21, 2011

[Link] [PDF]